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TaskSpaces: A Software Framework for Parallel Bioinformatics on Computational Grids
Hans De Sterck, Department of Applied Mathematics, University of Colorado at Boulder
Rob Knight, Department of Molecular, Cellular, and Developmental Biology, University of Colorado at Boulder
Rob Markel, Scientific Computing Division, National Center for Atmospheric Research
- ACM SAC 2003 paper describing the TaskSpaces framework.
H. De Sterck, R.S. Markel, T. Pohl, and U. Ruede,
`A lightweight Java Taskspaces framework for scientific computing on computational grids',
Proceedings of the ACM Symposium on Applied Computing, Track on Parallel
and Distributed Systems and Networking, 1024--1030, 2003. [pdf]
- Seminar in the CU Boulder Bioinformatics Supergroup describing
the TaskSpaces framework applied to a parallel bioinformatics RNA folding problem.
H. De Sterck, R.S. Markel, and R. Knight,
`A Software Framework for Parallel Bioinformatics on Computational Grids'.
Bioinformatics Supergroup Seminar, University of Colorado at Boulder, 3 November 2003. [pdf]
- Poster at the 2003 RNA Society Meeting describing the parallel bioinformatics
RNA folding problem and preliminary results.
R.D. Knight, H. De Sterck, R.S. Markel, C. Lozupone, S. Changayil, I. Majerfeld, and M. Yarus,
'Finding correctly folded active RNA motifs',
Poster presentation at the RNA Society Meeting, Vienna, Austria, July 1-6, 2003. [pdf]
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