taskspaces.rna
Class PairList

java.lang.Object
  |
  +--taskspaces.rna.PairList

public class PairList

extends java.lang.Object

Encapsulates a methods to create a map of paired indices given a dot-bracket notation structure.

Version:

1.0

Author:

Rob Markel

Constructor Summary

PairList()

Method Summary

static java.util.HashMap

getPairMap(java.lang.String s) Constructs a pair list map indicating what indices are paired in a given dot-bracket notation structure.

Methods inherited from class java.lang.Object

, clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, toString, wait, wait, wait

Constructor Detail

PairList

public PairList()

Method Detail

getPairMap

public static java.util.HashMap getPairMap(java.lang.String s)

Constructs a pair list map indicating what indices are paired in a given dot-bracket notation structure. Translated from original written in Feb 2002 by Rob Knight.

Parameters:

s - a dot-bracket structure.

Returns:

map indicating structure pairings.