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## taskspaces.rna
Class PairList

    java.lang.Object
      |
      +--taskspaces.rna.PairList

public class PairList
extends java.lang.Object

Encapsulates a methods to create a map of paired indices given a dot-bracket notation structure.

Version:
  1.0
Author:
  Rob Markel

Constructor Summary
`PairList()`

Method Summary
`static java.util.HashMap` | `getPairMap(java.lang.String s)` Constructs a pair list map indicating what indices are paired in a given dot-bracket notation structure.

Methods inherited from class java.lang.Object
`, clone, equals, finalize, getClass, hashCode, notify, notifyAll, registerNatives, toString, wait, wait, wait`

Constructor Detail

### PairList

    public PairList()

Method Detail

### getPairMap

    public static java.util.HashMap getPairMap(java.lang.String s)

  Constructs a pair list map indicating what indices are paired in a given dot-bracket notation structure. Translated from original written in Feb 2002 by Rob Knight.
  Parameters:
    `s` - a dot-bracket structure.
  Returns:
    map indicating structure pairings.

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